STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5LZL7_LEPOCGTPase activating protein and VPS9 domains 1. (1488 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.953
LOC102696857
RAB5B, member RAS oncogene family.
    
 0.852
RAB17
RAB17, member RAS oncogene family.
    
 0.852
rab5a
RAB5A, member RAS oncogene family, b.
    
 0.852
rab5c
RAB5C, member RAS oncogene family.
    
 0.852
rab21
RAB21, member RAS oncogene family.
   
 0.833
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
   
 0.802
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.800
RAB31
RAB31, member RAS oncogene family.
    
 0.759
rab22a
RAB22A, member RAS oncogene family.
    
 0.759
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.