slc1a2 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

slc1a2

Amino acid transporter. (633 aa)

Predicted Functional Partners:

W5NC89_LEPOC

0.864

tnr

0.745

W5MWN7_LEPOC

0.699

LOC107075870

0.695

glul

0.675

snap25

0.674

stmn2

0.672

W5MN85_LEPOC

0.668

W5MBA9_LEPOC

0.627

LOC102694470

0.618

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102694470	LOC107075870	ENSLOCP00000010901	ENSLOCP00000002127	Solute carrier family 7 member 1a.	Aamy domain-containing protein.	0.711
LOC102694470	slc1a2	ENSLOCP00000010901	ENSLOCP00000001580	Solute carrier family 7 member 1a.	Amino acid transporter.	0.618
LOC107075870	LOC102694470	ENSLOCP00000002127	ENSLOCP00000010901	Aamy domain-containing protein.	Solute carrier family 7 member 1a.	0.711
LOC107075870	glul	ENSLOCP00000002127	ENSLOCP00000005347	Aamy domain-containing protein.	Glutamine synthetase.	0.416
LOC107075870	slc1a2	ENSLOCP00000002127	ENSLOCP00000001580	Aamy domain-containing protein.	Amino acid transporter.	0.695
W5MBA9_LEPOC	W5MN85_LEPOC	ENSLOCP00000005668	ENSLOCP00000009844	Neurocan b.	Brevican.	0.942
W5MBA9_LEPOC	W5NC89_LEPOC	ENSLOCP00000005668	ENSLOCP00000018248	Neurocan b.	Proteolipid protein 1a.	0.652
W5MBA9_LEPOC	slc1a2	ENSLOCP00000005668	ENSLOCP00000001580	Neurocan b.	Amino acid transporter.	0.627
W5MBA9_LEPOC	tnr	ENSLOCP00000005668	ENSLOCP00000002783	Neurocan b.	Tenascin R (restrictin, janusin).	0.834
W5MN85_LEPOC	W5MBA9_LEPOC	ENSLOCP00000009844	ENSLOCP00000005668	Brevican.	Neurocan b.	0.942
W5MN85_LEPOC	W5NC89_LEPOC	ENSLOCP00000009844	ENSLOCP00000018248	Brevican.	Proteolipid protein 1a.	0.720
W5MN85_LEPOC	slc1a2	ENSLOCP00000009844	ENSLOCP00000001580	Brevican.	Amino acid transporter.	0.668
W5MN85_LEPOC	tnr	ENSLOCP00000009844	ENSLOCP00000002783	Brevican.	Tenascin R (restrictin, janusin).	0.900
W5MWN7_LEPOC	W5NC89_LEPOC	ENSLOCP00000012796	ENSLOCP00000018248	Huntingtin.	Proteolipid protein 1a.	0.814
W5MWN7_LEPOC	slc1a2	ENSLOCP00000012796	ENSLOCP00000001580	Huntingtin.	Amino acid transporter.	0.699
W5MWN7_LEPOC	snap25	ENSLOCP00000012796	ENSLOCP00000019624	Huntingtin.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.842
W5NC89_LEPOC	W5MBA9_LEPOC	ENSLOCP00000018248	ENSLOCP00000005668	Proteolipid protein 1a.	Neurocan b.	0.652
W5NC89_LEPOC	W5MN85_LEPOC	ENSLOCP00000018248	ENSLOCP00000009844	Proteolipid protein 1a.	Brevican.	0.720
W5NC89_LEPOC	W5MWN7_LEPOC	ENSLOCP00000018248	ENSLOCP00000012796	Proteolipid protein 1a.	Huntingtin.	0.814
W5NC89_LEPOC	glul	ENSLOCP00000018248	ENSLOCP00000005347	Proteolipid protein 1a.	Glutamine synthetase.	0.541