Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rabgef1RAB guanine nucleotide exchange factor (GEF) 1. (535 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.997
LOC102696857
RAB5B, member RAS oncogene family.
   
 0.995
rab5a
RAB5A, member RAS oncogene family, b.
   
 0.995
rab5c
RAB5C, member RAS oncogene family.
   
 0.995
rab21
RAB21, member RAS oncogene family.
    
 0.973
W5N395_LEPOC
RAB24, member RAS oncogene family.
   
 0.962
LOC102685971
Uncharacterized protein.
  
  
0.958
RAB17
RAB17, member RAS oncogene family.
   
 0.957
RAB31
RAB31, member RAS oncogene family.
   
 0.950
rab22a
RAB22A, member RAS oncogene family.
   
 0.950
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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