Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yaf2YY1 associated factor 2. (218 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.987
wdr5
WD repeat domain 5.
    
 
 0.980
pcgf5
Polycomb group ring finger 5b.
    
 0.970
LOC102698732
Si:ch211-195d17.2.
   
 0.970
pcgf1
Polycomb group ring finger 1.
    
 0.967
pcgf6
Polycomb group ring finger 6.
    
 0.962
yy1
YY1 transcription factor b.
    
 
 0.955
PCGF3
Polycomb group ring finger 3.
    
 0.954
W5M8P1_LEPOC
Activator of transcription and developmental regulator AUTS2 a.
    
 0.951
W5M6G6_LEPOC
Fibrosin.
    
 0.942
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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