Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phb2Prohibitin. (304 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.999
stoml2
Stomatin (EPB72)-like 2.
   
 0.993
c1qbp
Complement component 1, q subcomponent binding protein.
   
 0.992
LOC102685547
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
  
 
 0.966
LOC102682566
Ubiquinol-cytochrome c reductase core protein 1.
  
 0.963
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
  
 0.963
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
    
 0.961
map1lc3a
Microtubule associated protein 1 light chain 3 alpha.
    
 0.961
GABARAPL2
GABA(A) receptor-associated protein like 2.
    
 0.960
gabarap
GABA(A) receptor-associated protein a.
    
 0.960
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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