STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (449 aa)    
Predicted Functional Partners:
W5M2L8_LEPOC
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.999
riok2
RIO kinase 2 (yeast).
   
 0.999
TSR1
TSR1 ribosome maturation factor.
   
 0.999
LOC102696124
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.999
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
 0.999
bysl
Bystin-like.
   
 0.999
ENSLOCP00000017361
annotation not available
    
  0.999
ltv1
LTV1 ribosome biogenesis factor.
   
 0.999
W5LXF3_LEPOC
Ribosomal_S7 domain-containing protein.
   
 0.998
W5M2I5_LEPOC
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.998
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.