Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kctd7Potassium channel tetramerization domain containing 7. (340 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.992
SHKBP1
SH3KBP1 binding protein 1.
    
 
 0.717
kctd3
Potassium channel tetramerization domain containing 3.
    
 
 0.717
asb1
Ankyrin repeat and SOCS box containing 1.
     
 0.716
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.705
W5N979_LEPOC
CLN6 transmembrane ER protein a.
    
 
 0.693
tbl2
Transducin (beta)-like 2.
      
 0.679
cln5
CLN5 intracellular trafficking protein.
    
 
 0.679
sumf2
Sulfatase modifying factor 2.
     
 0.626
commd9
COMM domain containing 9.
     
  0.622
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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