Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
pamr1Si:ch211-102l7.3; Belongs to the peptidase S1 family. (850 aa)    
Predicted Functional Partners:
smim12
Small integral membrane protein 12.
    
 0.743
lrrc40
Leucine rich repeat containing 40.
    
 0.655
W5MQZ6_LEPOC
Ring finger protein 151.
      
 0.638
W5LZ54_LEPOC
T cell activation inhibitor, mitochondrial.
      
 0.619
bend7
Si:ch211-220f12.4.
      
 0.611
W5MBN6_LEPOC
Uncharacterized protein.
      
 0.586
snapc3
Small nuclear RNA activating complex, polypeptide 3.
      
 0.549
LOC102685173
Calcium homeostasis modulator family member 5, tandem duplicate 2.
      
 0.538
W5M292_LEPOC
UBX domain protein 10.
      
 0.525
mocs1
Molybdenum cofactor synthesis 1.
      
 0.525
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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