clg26h11orf1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

clg26h11orf1

Expressed sequence EH456644. (119 aa)

Predicted Functional Partners:

clg25h1orf158

0.739

efhb

0.739

clg11h5orf49

0.706

W5MED6_LEPOC

0.706

cfap45

0.705

efhc1

0.697

W5M1L2_LEPOC

0.697

clg21h9orf116

0.697

fam166b

0.697

spaca9

0.697

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5M1L2_LEPOC	W5MED6_LEPOC	ENSLOCP00000002270	ENSLOCP00000006745	EF-hand domain (C-terminal) containing 2.	Cilia and flagella associated protein 77.	0.599
W5M1L2_LEPOC	cfap45	ENSLOCP00000002270	ENSLOCP00000003734	EF-hand domain (C-terminal) containing 2.	Cilia and flagella associated protein 45.	0.871
W5M1L2_LEPOC	clg11h5orf49	ENSLOCP00000002270	ENSLOCP00000000712	EF-hand domain (C-terminal) containing 2.	Uncharacterized protein.	0.698
W5M1L2_LEPOC	clg21h9orf116	ENSLOCP00000002270	ENSLOCP00000004419	EF-hand domain (C-terminal) containing 2.	Si:ch211-248e11.2.	0.869
W5M1L2_LEPOC	clg25h1orf158	ENSLOCP00000002270	ENSLOCP00000003730	EF-hand domain (C-terminal) containing 2.	Si:ch211-226m7.4.	0.720
W5M1L2_LEPOC	clg26h11orf1	ENSLOCP00000002270	ENSLOCP00000001635	EF-hand domain (C-terminal) containing 2.	Expressed sequence EH456644.	0.697
W5M1L2_LEPOC	efhb	ENSLOCP00000002270	ENSLOCP00000007928	EF-hand domain (C-terminal) containing 2.	EF-hand domain family, member B.	0.901
W5M1L2_LEPOC	efhc1	ENSLOCP00000002270	ENSLOCP00000001002	EF-hand domain (C-terminal) containing 2.	EF-hand domain (C-terminal) containing 1.	0.897
W5M1L2_LEPOC	fam166b	ENSLOCP00000002270	ENSLOCP00000005476	EF-hand domain (C-terminal) containing 2.	Family with sequence similarity 166 member B.	0.719
W5M1L2_LEPOC	spaca9	ENSLOCP00000002270	ENSLOCP00000006849	EF-hand domain (C-terminal) containing 2.	Sperm acrosome associated 9.	0.720
W5MED6_LEPOC	W5M1L2_LEPOC	ENSLOCP00000006745	ENSLOCP00000002270	Cilia and flagella associated protein 77.	EF-hand domain (C-terminal) containing 2.	0.599
W5MED6_LEPOC	clg11h5orf49	ENSLOCP00000006745	ENSLOCP00000000712	Cilia and flagella associated protein 77.	Uncharacterized protein.	0.728
W5MED6_LEPOC	clg25h1orf158	ENSLOCP00000006745	ENSLOCP00000003730	Cilia and flagella associated protein 77.	Si:ch211-226m7.4.	0.706
W5MED6_LEPOC	clg26h11orf1	ENSLOCP00000006745	ENSLOCP00000001635	Cilia and flagella associated protein 77.	Expressed sequence EH456644.	0.706
W5MED6_LEPOC	efhb	ENSLOCP00000006745	ENSLOCP00000007928	Cilia and flagella associated protein 77.	EF-hand domain family, member B.	0.719
W5MED6_LEPOC	efhc1	ENSLOCP00000006745	ENSLOCP00000001002	Cilia and flagella associated protein 77.	EF-hand domain (C-terminal) containing 1.	0.590
W5MED6_LEPOC	fam166b	ENSLOCP00000006745	ENSLOCP00000005476	Cilia and flagella associated protein 77.	Family with sequence similarity 166 member B.	0.697
W5MED6_LEPOC	spaca9	ENSLOCP00000006745	ENSLOCP00000006849	Cilia and flagella associated protein 77.	Sperm acrosome associated 9.	0.760
cfap45	W5M1L2_LEPOC	ENSLOCP00000003734	ENSLOCP00000002270	Cilia and flagella associated protein 45.	EF-hand domain (C-terminal) containing 2.	0.871
cfap45	clg11h5orf49	ENSLOCP00000003734	ENSLOCP00000000712	Cilia and flagella associated protein 45.	Uncharacterized protein.	0.718