Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl30Mitochondrial ribosomal protein L30. (169 aa)    
Predicted Functional Partners:
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.996
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.995
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.992
mrpl11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.988
mrpl16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.986
W5M387_LEPOC
Mitochondrial ribosomal protein S14.
   
 
 0.983
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.983
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.981
gadd45gip1
Growth arrest and DNA-damage-inducible, gamma interacting protein 1.
   
 
 0.980
W5MQY4_LEPOC
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.980
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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