STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prickle1Prickle homolog 1a. (873 aa)    
Predicted Functional Partners:
vangl1
Vang-like protein.
    
 0.976
W5NAR9_LEPOC
Dishevelled segment polarity protein 2.
    
 0.955
W5M4V5_LEPOC
Dishevelled segment polarity protein 1a.
    
 0.944
W5MP85_LEPOC
Dishevelled segment polarity protein 3a.
    
 0.944
W5NJY5_LEPOC
Ankyrin repeat domain 6b.
    
 0.749
W5MTD3_LEPOC
Frizzled class receptor 6; Belongs to the G-protein coupled receptor Fz/Smo family.
  
 
 0.693
psmd3
Proteasome 26S subunit, non-ATPase 3.
    
  0.662
smurf1
E3 ubiquitin-protein ligase.
     
 0.597
W5N7W2_LEPOC
E3 ubiquitin-protein ligase.
     
 0.597
tbx1
T-box transcription factor 1.
      
 0.580
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.