STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102685634Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (308 aa)    
Predicted Functional Partners:
capns1
Calpain, small subunit 1 b.
 
 
 0.937
W5NF49_LEPOC
Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.
  
 
 
0.707
LOC102692054
Si:ch211-202f3.3; Belongs to the peptidase C2 family.
  
  
 
0.706
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.619
pef1
Penta-EF-hand domain containing 1.
   
 0.556
pdcd6
Programmed cell death 6.
   
 0.556
gca
Grancalcin.
   
 0.555
sri
Sorcin.
   
 0.555
tln1
Talin 1.
    
 0.503
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.492
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.