Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC102685634Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (308 aa)    
Predicted Functional Partners:
capns1
Calpain, small subunit 1 b.
 
 
 0.950
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.454
ptpn1
Tyrosine-protein phosphatase non-receptor type.
    
 
 0.433
W5N6M9_LEPOC
Microtubule-associated protein.
    
 
 0.430
W5M401_LEPOC
Nebulin.
   
  
 0.428
pef1
Penta-EF-hand domain containing 1.
    
  0.426
gca
Grancalcin.
    
  0.426
sri
Sorcin.
    
  0.426
pdcd6
Programmed cell death 6.
    
  0.426
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.421
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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