Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mitd1MIT, microtubule interacting and transport, domain containing 1. (246 aa)    
Predicted Functional Partners:
chmp5
Charged multivesicular body protein 5a.
   
 
 0.936
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.918
chmp1b
Chromatin modifying protein 1B.
    
 
 0.918
W5MIA5_LEPOC
Peptidoglycan recognition protein 6.
      
 0.820
tmem121
Transmembrane protein 121Ab.
      
 0.785
mrpl30
Mitochondrial ribosomal protein L30.
      
 0.687
ids
Iduronate 2-sulfatase.
      
 0.687
txndc9
Thioredoxin domain containing 9.
      
 0.680
EIF5B
Eukaryotic translation initiation factor 5B.
      
 0.677
ist1
IST1 factor associated with ESCRT-III.
      
 0.674
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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