W5LZZ7_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

W5LZZ7_LEPOC

Retrotrans_gag domain-containing protein. (248 aa)

Predicted Functional Partners:

FANCM

0.619

lin52

0.536

lin54

0.529

lin9

0.479

rpa2

0.438

W5NNW9_LEPOC

0.438

rbbp4

0.429

rbbp7

0.429

rbl2

0.415

rbl1

0.415

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FANCM	W5LZZ7_LEPOC	ENSLOCP00000013912	ENSLOCP00000001704	FA complementation group M.	Retrotrans_gag domain-containing protein.	0.619
FANCM	W5NNW9_LEPOC	ENSLOCP00000013912	ENSLOCP00000022328	FA complementation group M.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.933
FANCM	rpa2	ENSLOCP00000013912	ENSLOCP00000003635	FA complementation group M.	Replication protein A2.	0.933
W5LZZ7_LEPOC	FANCM	ENSLOCP00000001704	ENSLOCP00000013912	Retrotrans_gag domain-containing protein.	FA complementation group M.	0.619
W5LZZ7_LEPOC	W5NNW9_LEPOC	ENSLOCP00000001704	ENSLOCP00000022328	Retrotrans_gag domain-containing protein.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.438
W5LZZ7_LEPOC	lin52	ENSLOCP00000001704	ENSLOCP00000013401	Retrotrans_gag domain-containing protein.	Lin-52 DREAM MuvB core complex component.	0.536
W5LZZ7_LEPOC	lin54	ENSLOCP00000001704	ENSLOCP00000013082	Retrotrans_gag domain-containing protein.	Lin-54 DREAM MuvB core complex component.	0.529
W5LZZ7_LEPOC	lin9	ENSLOCP00000001704	ENSLOCP00000019447	Retrotrans_gag domain-containing protein.	Lin-9 DREAM MuvB core complex component.	0.479
W5LZZ7_LEPOC	rbbp4	ENSLOCP00000001704	ENSLOCP00000002589	Retrotrans_gag domain-containing protein.	Retinoblastoma binding protein 4.	0.429
W5LZZ7_LEPOC	rbbp7	ENSLOCP00000001704	ENSLOCP00000008998	Retrotrans_gag domain-containing protein.	Retinoblastoma binding protein 4, like.	0.429
W5LZZ7_LEPOC	rbl1	ENSLOCP00000001704	ENSLOCP00000008944	Retrotrans_gag domain-containing protein.	Retinoblastoma-like 1 (p107).	0.415
W5LZZ7_LEPOC	rbl2	ENSLOCP00000001704	ENSLOCP00000008720	Retrotrans_gag domain-containing protein.	Retinoblastoma-like 2 (p130).	0.415
W5LZZ7_LEPOC	rpa2	ENSLOCP00000001704	ENSLOCP00000003635	Retrotrans_gag domain-containing protein.	Replication protein A2.	0.438
W5NNW9_LEPOC	FANCM	ENSLOCP00000022328	ENSLOCP00000013912	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	FA complementation group M.	0.933
W5NNW9_LEPOC	W5LZZ7_LEPOC	ENSLOCP00000022328	ENSLOCP00000001704	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Retrotrans_gag domain-containing protein.	0.438
lin52	W5LZZ7_LEPOC	ENSLOCP00000013401	ENSLOCP00000001704	Lin-52 DREAM MuvB core complex component.	Retrotrans_gag domain-containing protein.	0.536
lin52	lin54	ENSLOCP00000013401	ENSLOCP00000013082	Lin-52 DREAM MuvB core complex component.	Lin-54 DREAM MuvB core complex component.	0.999
lin52	lin9	ENSLOCP00000013401	ENSLOCP00000019447	Lin-52 DREAM MuvB core complex component.	Lin-9 DREAM MuvB core complex component.	0.999
lin52	rbbp4	ENSLOCP00000013401	ENSLOCP00000002589	Lin-52 DREAM MuvB core complex component.	Retinoblastoma binding protein 4.	0.997
lin52	rbbp7	ENSLOCP00000013401	ENSLOCP00000008998	Lin-52 DREAM MuvB core complex component.	Retinoblastoma binding protein 4, like.	0.997