Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (282 aa)    
Predicted Functional Partners:
W5LYY7_LEPOC
tRNA methyltransferase subunit 11-2.
   
 0.997
ltv1
LTV1 ribosome biogenesis factor.
   
 0.992
bysl
Bystin-like.
   
 0.990
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.984
nop14
NOP14 nucleolar protein homolog (yeast).
   
 
 0.981
TSR1
TSR1 ribosome maturation factor.
   
 0.979
pno1
Partner of NOB1 homolog.
   
 0.960
utp14a
UTP14C small subunit processome component.
   
 
 0.958
W5M895_LEPOC
Ribosomal RNA processing 12 homolog.
   
 
 0.956
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
   0.956
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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