EIF4ENIF1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EIF4ENIF1

Eukaryotic translation initiation factor 4E nuclear import factor 1. (665 aa)

Predicted Functional Partners:

lsm14a

0.981

lsm14b

0.975

W5MF44_LEPOC

0.960

ddx6

0.955

W5M9Z3_LEPOC

0.955

cnot1

0.933

eif4e1b

0.932

eif4e

0.932

LOC102697157

0.918

W5M4U9_LEPOC

0.817

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	LOC102697157	ENSLOCP00000001727	ENSLOCP00000011391	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	0.918
EIF4ENIF1	W5M4U9_LEPOC	ENSLOCP00000001727	ENSLOCP00000003407	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Ring finger and CCCH-type domains 2.	0.817
EIF4ENIF1	W5M9Z3_LEPOC	ENSLOCP00000001727	ENSLOCP00000005202	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 61.	0.955
EIF4ENIF1	W5MF44_LEPOC	ENSLOCP00000001727	ENSLOCP00000007003	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Eukaryotic translation initiation factor 4E family member 2; Belongs to the eukaryotic initiation factor 4E family.	0.960
EIF4ENIF1	cnot1	ENSLOCP00000001727	ENSLOCP00000007644	Eukaryotic translation initiation factor 4E nuclear import factor 1.	CCR4-NOT transcription complex, subunit 1.	0.933
EIF4ENIF1	ddx6	ENSLOCP00000001727	ENSLOCP00000000862	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.955
EIF4ENIF1	eif4e	ENSLOCP00000001727	ENSLOCP00000015009	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.932
EIF4ENIF1	eif4e1b	ENSLOCP00000001727	ENSLOCP00000014553	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Eukaryotic translation initiation factor 4E family member 1B; Belongs to the eukaryotic initiation factor 4E family.	0.932
EIF4ENIF1	lsm14a	ENSLOCP00000001727	ENSLOCP00000002344	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM14A mRNA processing body assembly factor b.	0.981
EIF4ENIF1	lsm14b	ENSLOCP00000001727	ENSLOCP00000004481	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM family member 14B.	0.975
LOC102697157	EIF4ENIF1	ENSLOCP00000011391	ENSLOCP00000001727	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.918
LOC102697157	W5M9Z3_LEPOC	ENSLOCP00000011391	ENSLOCP00000005202	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	DEAD (Asp-Glu-Ala-Asp) box helicase 61.	0.810
LOC102697157	W5MF44_LEPOC	ENSLOCP00000011391	ENSLOCP00000007003	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E family member 2; Belongs to the eukaryotic initiation factor 4E family.	0.915
LOC102697157	cnot1	ENSLOCP00000011391	ENSLOCP00000007644	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	CCR4-NOT transcription complex, subunit 1.	0.565
LOC102697157	ddx6	ENSLOCP00000011391	ENSLOCP00000000862	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.810
LOC102697157	eif4e	ENSLOCP00000011391	ENSLOCP00000015009	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.901
LOC102697157	eif4e1b	ENSLOCP00000011391	ENSLOCP00000014553	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4E family member 1B; Belongs to the eukaryotic initiation factor 4E family.	0.902
LOC102697157	lsm14a	ENSLOCP00000011391	ENSLOCP00000002344	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	LSM14A mRNA processing body assembly factor b.	0.492
LOC102697157	lsm14b	ENSLOCP00000011391	ENSLOCP00000004481	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family.	LSM family member 14B.	0.550
W5M4U9_LEPOC	EIF4ENIF1	ENSLOCP00000003407	ENSLOCP00000001727	Ring finger and CCCH-type domains 2.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.817