STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ighmbp2Immunoglobulin mu DNA binding protein 2. (984 aa)    
Predicted Functional Partners:
LOC102683016
Negative elongation factor complex member E.
    
 
 0.971
nelfa
Negative elongation factor complex member A.
   
   0.933
GRSF1
G-rich RNA sequence binding factor 1.
    
   0.873
nelfcd
Negative elongation factor complex member C/D.
    
   0.780
W5LZE9_LEPOC
Uncharacterized protein.
      
 0.736
W5NBB0_LEPOC
Activator of basal transcription 1.
    
 
 0.734
mapk15
Mitogen-activated protein kinase.
      
 0.695
kansl3
KAT8 regulatory NSL complex subunit 3.
      
 0.694
timm13
Translocase of inner mitochondrial membrane 13 homolog (yeast); Belongs to the small Tim family.
      
 0.692
rpgrip1l
RPGRIP1 like.
      
 0.687
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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