STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ighmbp2Immunoglobulin mu DNA binding protein 2. (984 aa)    
Predicted Functional Partners:
LOC102683016
Negative elongation factor complex member E.
    
   0.675
yars1
Tyrosine--tRNA ligase.
      
 0.612
nelfa
Negative elongation factor complex member A.
   
   0.600
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.540
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
   
    0.515
gars1
Glycyl-tRNA synthetase.
      
 0.510
W5NBB0_LEPOC
Activator of basal transcription 1.
    
 
 0.508
GTF3C1
General transcription factor IIIC subunit 1.
    
 
 0.443
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.