kiaa1211l protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

kiaa1211l

DUF4592 domain-containing protein. (973 aa)

Predicted Functional Partners:

W5N9G9_LEPOC

0.927

FANCM

0.590

mus81

0.586

ddx20

0.573

pold2

0.562

W5LXJ3_LEPOC

0.518

snrpd2

0.476

snrpe

0.473

pcna

0.463

bard1

0.462

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FANCM	W5LXJ3_LEPOC	ENSLOCP00000013912	ENSLOCP00000000850	FA complementation group M.	DNA_pol_B domain-containing protein.	0.933
FANCM	bard1	ENSLOCP00000013912	ENSLOCP00000005344	FA complementation group M.	BRCA1 associated RING domain 1.	0.864
FANCM	kiaa1211l	ENSLOCP00000013912	ENSLOCP00000001731	FA complementation group M.	DUF4592 domain-containing protein.	0.590
FANCM	mus81	ENSLOCP00000013912	ENSLOCP00000000888	FA complementation group M.	MUS81 structure-specific endonuclease subunit.	0.995
FANCM	pcna	ENSLOCP00000013912	ENSLOCP00000019251	FA complementation group M.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.994
FANCM	pold2	ENSLOCP00000013912	ENSLOCP00000018670	FA complementation group M.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.692
W5LXJ3_LEPOC	FANCM	ENSLOCP00000000850	ENSLOCP00000013912	DNA_pol_B domain-containing protein.	FA complementation group M.	0.933
W5LXJ3_LEPOC	bard1	ENSLOCP00000000850	ENSLOCP00000005344	DNA_pol_B domain-containing protein.	BRCA1 associated RING domain 1.	0.702
W5LXJ3_LEPOC	kiaa1211l	ENSLOCP00000000850	ENSLOCP00000001731	DNA_pol_B domain-containing protein.	DUF4592 domain-containing protein.	0.518
W5LXJ3_LEPOC	mus81	ENSLOCP00000000850	ENSLOCP00000000888	DNA_pol_B domain-containing protein.	MUS81 structure-specific endonuclease subunit.	0.873
W5LXJ3_LEPOC	pcna	ENSLOCP00000000850	ENSLOCP00000019251	DNA_pol_B domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.997
W5LXJ3_LEPOC	pold2	ENSLOCP00000000850	ENSLOCP00000018670	DNA_pol_B domain-containing protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.999
W5N9G9_LEPOC	bard1	ENSLOCP00000017278	ENSLOCP00000005344	Si:dkeyp-117h8.2.	BRCA1 associated RING domain 1.	0.423
W5N9G9_LEPOC	kiaa1211l	ENSLOCP00000017278	ENSLOCP00000001731	Si:dkeyp-117h8.2.	DUF4592 domain-containing protein.	0.927
bard1	FANCM	ENSLOCP00000005344	ENSLOCP00000013912	BRCA1 associated RING domain 1.	FA complementation group M.	0.864
bard1	W5LXJ3_LEPOC	ENSLOCP00000005344	ENSLOCP00000000850	BRCA1 associated RING domain 1.	DNA_pol_B domain-containing protein.	0.702
bard1	W5N9G9_LEPOC	ENSLOCP00000005344	ENSLOCP00000017278	BRCA1 associated RING domain 1.	Si:dkeyp-117h8.2.	0.423
bard1	kiaa1211l	ENSLOCP00000005344	ENSLOCP00000001731	BRCA1 associated RING domain 1.	DUF4592 domain-containing protein.	0.462
bard1	mus81	ENSLOCP00000005344	ENSLOCP00000000888	BRCA1 associated RING domain 1.	MUS81 structure-specific endonuclease subunit.	0.833
bard1	pcna	ENSLOCP00000005344	ENSLOCP00000019251	BRCA1 associated RING domain 1.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.736