Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP1CDK5 regulatory subunit associated protein 1. (583 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
   
 
 0.940
W5NA54_LEPOC
Exosome component 5.
   
   0.909
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
   0.869
W5MEK7_LEPOC
PRP40 pre-mRNA processing factor 40 homolog A.
 
 
    0.790
W5MLF3_LEPOC
Transmembrane and coiled-coil domains 4.
 
      0.755
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.622
ENDOV
Endonuclease V.
  
 
 0.622
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
      
 0.609
taf8
TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
 
      0.597
immp1l
Mitochondrial inner membrane protease subunit.
 
    0.595
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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