STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP1CDK5 regulatory subunit associated protein 1. (583 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
    
 
 0.935
W5NA54_LEPOC
Exosome component 5.
   
   0.916
W5MEK7_LEPOC
PRP40 pre-mRNA processing factor 40 homolog A.
 
 
    0.790
W5MLF3_LEPOC
Transmembrane and coiled-coil domains 4.
 
      0.755
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.733
ENDOV
Endonuclease V.
  
 
 0.733
taf8
TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
 
      0.597
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.591
immp1l
Mitochondrial inner membrane protease subunit.
 
    0.570
W5NJE8_LEPOC
HGTP_anticodon domain-containing protein.
  
  
 0.561
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.