Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ASTE1Asteroid homolog 1. (685 aa)    
Predicted Functional Partners:
W5M9Z9_LEPOC
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.687
TMEM108
Transmembrane protein 108.
      
 0.683
ctxn1
Cortexin 1.
      
 0.639
W5M443_LEPOC
Replication timing regulatory factor 1.
    
 
 0.637
FANCM
FA complementation group M.
    
 0.590
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.586
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
    
 0.573
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.562
tp53bp1
Tumor protein p53 binding protein, 1.
    
 
 0.551
mad2l2
Mitotic arrest deficient 2 like 2.
    
 
 0.547
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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