STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp28Matrix metallopeptidase 28. (459 aa)    
Predicted Functional Partners:
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 0.608
timp2
TIMP metallopeptidase inhibitor 2b.
    
 0.559
W5NAT1_LEPOC
NTR domain-containing protein.
    
 0.559
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.558
furin
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 0.482
PCSK4
Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family.
   
 0.467
W5LZK3_LEPOC
Link domain-containing protein.
    
 0.435
W5MHF2_LEPOC
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
      
 0.432
hbegf
Heparin-binding EGF-like growth factor a.
    
  0.426
W5M865_LEPOC
VWFA domain-containing protein.
    
  0.425
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (18%) [HD]