Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vax2Ventral anterior homeobox 2. (288 aa)    
Predicted Functional Partners:
atp6v1b1
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
   
  
 0.670
W5MEW7_LEPOC
NAC alpha domain containing.
      
 0.634
mex3a
RING-type domain-containing protein.
      
 0.618
W5M7I4_LEPOC
Phosphatase and actin regulator.
      
 0.612
phactr2
Phosphatase and actin regulator.
      
 0.612
W5M280_LEPOC
Splicing factor 1.
      
 0.604
tbx5
T-box transcription factor 5a.
     
 0.580
chmp3
Charged multivesicular body protein 3.
    
   0.576
W5M2K9_LEPOC
Uncharacterized protein.
      
 0.516
scrt1
Scratch family zinc finger 1b.
      
 0.516
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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