W5M0E0_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5M0E0_LEPOC

Uncharacterized protein. (475 aa)

Predicted Functional Partners:

nsmce4a

0.974

nsmce1

0.973

W5NL09_LEPOC

0.961

smc5

0.960

NSMCE2

0.960

LOC102692225

0.823

smc3

0.819

smc4

0.740

smc2

0.740

W5NCA9_LEPOC

0.740

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102692225	W5M0E0_LEPOC	ENSLOCP00000006777	ENSLOCP00000001847	Neurotrophin receptor associated death domain.	Uncharacterized protein.	0.823
NSMCE2	W5M0E0_LEPOC	ENSLOCP00000012277	ENSLOCP00000001847	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Uncharacterized protein.	0.960
NSMCE2	W5NCA9_LEPOC	ENSLOCP00000012277	ENSLOCP00000018268	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	SMC_N domain-containing protein.	0.880
NSMCE2	W5NL09_LEPOC	ENSLOCP00000012277	ENSLOCP00000021318	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Si:dkey-119f1.1.	0.999
NSMCE2	nsmce1	ENSLOCP00000012277	ENSLOCP00000004773	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	NSE1 homolog, SMC5-SMC6 complex component.	0.999
NSMCE2	nsmce4a	ENSLOCP00000012277	ENSLOCP00000010698	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.999
NSMCE2	smc2	ENSLOCP00000012277	ENSLOCP00000016447	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Structural maintenance of chromosomes protein.	0.904
NSMCE2	smc3	ENSLOCP00000012277	ENSLOCP00000015178	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Structural maintenance of chromosomes protein.	0.930
NSMCE2	smc4	ENSLOCP00000012277	ENSLOCP00000004358	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Structural maintenance of chromosomes protein.	0.887
NSMCE2	smc5	ENSLOCP00000012277	ENSLOCP00000011605	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	Structural maintenance of chromosomes 5.	0.999
W5M0E0_LEPOC	LOC102692225	ENSLOCP00000001847	ENSLOCP00000006777	Uncharacterized protein.	Neurotrophin receptor associated death domain.	0.823
W5M0E0_LEPOC	NSMCE2	ENSLOCP00000001847	ENSLOCP00000012277	Uncharacterized protein.	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.	0.960
W5M0E0_LEPOC	W5NCA9_LEPOC	ENSLOCP00000001847	ENSLOCP00000018268	Uncharacterized protein.	SMC_N domain-containing protein.	0.740
W5M0E0_LEPOC	W5NL09_LEPOC	ENSLOCP00000001847	ENSLOCP00000021318	Uncharacterized protein.	Si:dkey-119f1.1.	0.961
W5M0E0_LEPOC	nsmce1	ENSLOCP00000001847	ENSLOCP00000004773	Uncharacterized protein.	NSE1 homolog, SMC5-SMC6 complex component.	0.973
W5M0E0_LEPOC	nsmce4a	ENSLOCP00000001847	ENSLOCP00000010698	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.974
W5M0E0_LEPOC	smc2	ENSLOCP00000001847	ENSLOCP00000016447	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.740
W5M0E0_LEPOC	smc3	ENSLOCP00000001847	ENSLOCP00000015178	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.819
W5M0E0_LEPOC	smc4	ENSLOCP00000001847	ENSLOCP00000004358	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.740
W5M0E0_LEPOC	smc5	ENSLOCP00000001847	ENSLOCP00000011605	Uncharacterized protein.	Structural maintenance of chromosomes 5.	0.960