STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pik3r4Phosphoinositide-3-kinase, regulatory subunit 4. (1377 aa)    
Predicted Functional Partners:
W5MBD8_LEPOC
UV radiation resistance associated gene.
    
 0.999
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
   
 0.999
becn1
Beclin 1, autophagy related.
    
 0.999
atg14
Autophagy related 14.
    
 0.999
nrbf2
Nuclear receptor binding factor 2b.
    
 0.996
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.989
ulk1
Unc-51 like autophagy activating kinase 1a.
    
 0.989
W5ME60_LEPOC
Autophagy/beclin-1 regulator 1a.
   
 
 0.948
W5NNT4_LEPOC
Autophagy related 101.
     
 0.939
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
     
 0.938
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.