Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBXN4UBX domain protein 4. (505 aa)    
Predicted Functional Partners:
ubxn6
UBX domain protein 6.
    
 
 0.991
ube4a
Ubiquitination factor E4A (UFD2 homolog, yeast).
    
 
 0.976
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.957
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
   
 
 0.957
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.865
ASPSCR1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.853
IP6K3
Kinase; Belongs to the inositol phosphokinase (IPK) family.
    
   0.841
W5N758_LEPOC
Kinase; Belongs to the inositol phosphokinase (IPK) family.
    
   0.841
W5MIZ7_LEPOC
Uncharacterized protein.
    
   0.829
BCL11B
BAF chromatin remodeling complex subunit BCL11B.
    
   0.801
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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