Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chrna4Cholinergic receptor, nicotinic, alpha 4b. (630 aa)    
Predicted Functional Partners:
chrnb3
Cholinergic receptor, nicotinic, beta 3b (neuronal).
  
 
0.991
chrna5
Cholinergic receptor, nicotinic, alpha 5.
  
 
0.991
W5MF93_LEPOC
Cholinergic receptor, nicotinic, gamma.
  
 
 
0.977
W5N551_LEPOC
Cholinergic receptor, nicotinic, alpha 6.
  
 
 
0.977
W5N7U6_LEPOC
Cholinergic receptor, nicotinic, epsilon.
  
 
 
0.977
chrnb1
Cholinergic receptor, nicotinic, beta 1 (muscle).
  
 
 
0.977
LOC102696950
Cholinergic receptor, nicotinic, beta 1 (muscle) like.
  
 
 
0.977
W5NAD8_LEPOC
Cholinergic receptor, nicotinic, alpha 3.
  
 
 
0.977
chrnd
Cholinergic receptor, nicotinic, delta (muscle).
    
 
0.976
W5MKA6_LEPOC
Cholinergic receptor, nicotinic, alpha 1 (muscle).
  
0.969
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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