Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sun1Sad1 and UNC84 domain containing 1. (979 aa)    
Predicted Functional Partners:
W5MPQ9_LEPOC
Spectrin repeat containing, nuclear envelope family member 3.
    
 0.983
W5NHH6_LEPOC
Spectrin repeat containing, nuclear envelope 1b.
    
 0.982
W5M8B8_LEPOC
Uncharacterized protein.
    
 0.973
W5LYM1_LEPOC
Si:dkey-92f12.2.
  
  
0.909
LOC107079122
KASH_CCD domain-containing protein.
     
  0.900
W5NC25_LEPOC
Si:ch211-137a8.2.
    
 0.887
lmnb2
Lamin B2; Belongs to the intermediate filament family.
    
 0.873
lmnb1
Lamin B1; Belongs to the intermediate filament family.
    
 0.865
SYNE2
Spectrin repeat containing nuclear envelope protein 2.
    
 0.831
drosha
Drosha ribonuclease III.
      
 0.818
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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