Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zgpatZinc finger, CCCH-type with G patch domain. (522 aa)    
Predicted Functional Partners:
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
   0.967
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
 
 0.925
W5MBK8_LEPOC
Uncharacterized protein.
    
   0.818
lsm5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
   0.808
marchf6
Membrane-associated ring finger (C3HC4) 6.
   
  
 0.761
prpf8
Pre-mRNA processing factor 8.
    
   0.743
W5MCM2_LEPOC
Si:dkey-70p6.1.
   
  
 0.736
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
  
 0.699
arfrp1
ADP-ribosylation factor related protein 1.
   
  
 0.698
lsm3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
   0.673
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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