Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nit1Nitrilase 1. (313 aa)    
Predicted Functional Partners:
W5MQB9_LEPOC
Uncharacterized protein.
      
 0.748
bcat1
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.742
W5MWK3_LEPOC
Nudix (nucleoside diphosphate linked moiety X)-type motif 15.
    
 0.702
QPRT
Quinolinate phosphoribosyltransferase.
  
 
 0.690
tdp2
Tyrosyl-DNA phosphodiesterase 2b.
      
 0.689
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
     
 0.682
oplah
5-oxoprolinase, ATP-hydrolysing.
    
 0.682
sms
Spermine synthase.
  
 
 0.680
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 
 0.680
amd1
S-adenosylmethionine decarboxylase proenzyme.
    
 
 0.662
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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