STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd27Ankyrin repeat domain 27 (VPS9 domain). (1088 aa)    
Predicted Functional Partners:
LOC102691014
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.956
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.934
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.933
rab21
RAB21, member RAS oncogene family.
   
 0.884
rab38
RAB38b, member of RAS oncogene family.
    
 
 0.722
LOC102687563
Zgc:162171.
    
 
 0.722
rab32
RAB32b, member RAS oncogene family.
    
 
 0.722
eif2b2
Eukaryotic translation initiation factor 2B, subunit 2 beta; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.719
RAB31
RAB31, member RAS oncogene family.
    
 0.718
LOC102696857
RAB5B, member RAS oncogene family.
    
 0.718
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.