STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfrp1ADP-ribosylation factor related protein 1. (204 aa)    
Predicted Functional Partners:
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.919
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.872
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
   
 
 0.863
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.861
rab6a
RAB6A, member RAS oncogene family.
    
 0.807
rab41
RAB41, member RAS oncogene family.
    
 0.807
W5NDJ0_LEPOC
ADP-ribosylation factor-like 1.
    
 0.800
vps53
VPS53 subunit of GARP complex.
     
 0.793
stx16
Syntaxin 16.
    
 0.783
rgp1
GP1 homolog, RAB6A GEF complex partner 1.
    
  0.732
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.