Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)    
Predicted Functional Partners:
rpl18
Ribosomal protein L18.
   
 0.999
RPL7A
Ribosomal protein L7a.
  
 0.999
W5LXF3_LEPOC
Ribosomal_S7 domain-containing protein.
  
 
 0.999
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.999
W5LYG6_LEPOC
Ribosomal protein L14.
   
 0.999
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.999
rpl8
Ribosomal protein L8.
  
 0.999
rps28
Ribosomal protein S28.
   
 
 0.999
W5M5B4_LEPOC
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
  
 
 0.999
rpl28
Ribosomal protein L28.
   
 0.999
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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