W5M0N1_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

W5M0N1_LEPOC

C-type lectin domain-containing protein. (636 aa)

Predicted Functional Partners:

ubac1

0.690

PPIC

0.683

rasd1

0.651

serpinh1

0.609

LOC102682979

0.609

pigf

0.605

cdc5l

0.603

EML4

0.547

W5M3Y4_LEPOC

0.537

cxcr5

0.535

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EML4	W5M0N1_LEPOC	ENSLOCP00000020346	ENSLOCP00000001938	EMAP like 4.	C-type lectin domain-containing protein.	0.547
EML4	W5M3Y4_LEPOC	ENSLOCP00000020346	ENSLOCP00000003092	EMAP like 4.	Ion_trans_2 domain-containing protein.	0.615
LOC102682979	PPIC	ENSLOCP00000018141	ENSLOCP00000010549	SERPIN domain-containing protein; Belongs to the serpin family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.823
LOC102682979	W5M0N1_LEPOC	ENSLOCP00000018141	ENSLOCP00000001938	SERPIN domain-containing protein; Belongs to the serpin family.	C-type lectin domain-containing protein.	0.609
PPIC	LOC102682979	ENSLOCP00000010549	ENSLOCP00000018141	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.823
PPIC	W5M0N1_LEPOC	ENSLOCP00000010549	ENSLOCP00000001938	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	C-type lectin domain-containing protein.	0.683
PPIC	serpinh1	ENSLOCP00000010549	ENSLOCP00000001112	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	0.860
W5M0N1_LEPOC	EML4	ENSLOCP00000001938	ENSLOCP00000020346	C-type lectin domain-containing protein.	EMAP like 4.	0.547
W5M0N1_LEPOC	LOC102682979	ENSLOCP00000001938	ENSLOCP00000018141	C-type lectin domain-containing protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.609
W5M0N1_LEPOC	PPIC	ENSLOCP00000001938	ENSLOCP00000010549	C-type lectin domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.683
W5M0N1_LEPOC	W5M3Y4_LEPOC	ENSLOCP00000001938	ENSLOCP00000003092	C-type lectin domain-containing protein.	Ion_trans_2 domain-containing protein.	0.537
W5M0N1_LEPOC	cdc5l	ENSLOCP00000001938	ENSLOCP00000019466	C-type lectin domain-containing protein.	CDC5 cell division cycle 5-like (S. pombe).	0.603
W5M0N1_LEPOC	cxcr5	ENSLOCP00000001938	ENSLOCP00000000881	C-type lectin domain-containing protein.	Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.	0.535
W5M0N1_LEPOC	pigf	ENSLOCP00000001938	ENSLOCP00000020163	C-type lectin domain-containing protein.	Phosphatidylinositol glycan anchor biosynthesis, class F.	0.605
W5M0N1_LEPOC	rasd1	ENSLOCP00000001938	ENSLOCP00000002157	C-type lectin domain-containing protein.	RAS, dexamethasone-induced 1.	0.651
W5M0N1_LEPOC	serpinh1	ENSLOCP00000001938	ENSLOCP00000001112	C-type lectin domain-containing protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	0.609
W5M0N1_LEPOC	ubac1	ENSLOCP00000001938	ENSLOCP00000004007	C-type lectin domain-containing protein.	UBA domain containing 1.	0.690
W5M3Y4_LEPOC	EML4	ENSLOCP00000003092	ENSLOCP00000020346	Ion_trans_2 domain-containing protein.	EMAP like 4.	0.615
W5M3Y4_LEPOC	W5M0N1_LEPOC	ENSLOCP00000003092	ENSLOCP00000001938	Ion_trans_2 domain-containing protein.	C-type lectin domain-containing protein.	0.537
cdc5l	W5M0N1_LEPOC	ENSLOCP00000019466	ENSLOCP00000001938	CDC5 cell division cycle 5-like (S. pombe).	C-type lectin domain-containing protein.	0.603