W5M0P6_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5M0P6_LEPOC

Uncharacterized protein. (168 aa)

Predicted Functional Partners:

zmpste24

0.983

W5MQY7_LEPOC

0.948

icmt

0.946

fnta

0.938

LOC102684798

0.934

churc1

0.901

LOC102687407

0.857

cog6

0.770

USP42

0.721

usp36

0.721

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102684798	W5M0P6_LEPOC	ENSLOCP00000015288	ENSLOCP00000001953	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.934
LOC102684798	W5MQY7_LEPOC	ENSLOCP00000015288	ENSLOCP00000010796	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	OMA1 zinc metallopeptidase.	0.750
LOC102684798	fnta	ENSLOCP00000015288	ENSLOCP00000014959	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Farnesyltransferase, CAAX box, alpha.	0.996
LOC102684798	icmt	ENSLOCP00000015288	ENSLOCP00000005851	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Protein-S-isoprenylcysteine O-methyltransferase.	0.489
LOC102684798	zmpste24	ENSLOCP00000015288	ENSLOCP00000005215	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.923
LOC102687407	W5M0P6_LEPOC	ENSLOCP00000008522	ENSLOCP00000001953	Si:dkey-193c22.1.	Uncharacterized protein.	0.857
LOC102687407	icmt	ENSLOCP00000008522	ENSLOCP00000005851	Si:dkey-193c22.1.	Protein-S-isoprenylcysteine O-methyltransferase.	0.842
LOC102687407	zmpste24	ENSLOCP00000008522	ENSLOCP00000005215	Si:dkey-193c22.1.	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.856
USP42	W5M0P6_LEPOC	ENSLOCP00000010257	ENSLOCP00000001953	Ubiquitin specific peptidase 42; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.721
W5M0P6_LEPOC	LOC102684798	ENSLOCP00000001953	ENSLOCP00000015288	Uncharacterized protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.934
W5M0P6_LEPOC	LOC102687407	ENSLOCP00000001953	ENSLOCP00000008522	Uncharacterized protein.	Si:dkey-193c22.1.	0.857
W5M0P6_LEPOC	USP42	ENSLOCP00000001953	ENSLOCP00000010257	Uncharacterized protein.	Ubiquitin specific peptidase 42; Belongs to the peptidase C19 family.	0.721
W5M0P6_LEPOC	W5MQY7_LEPOC	ENSLOCP00000001953	ENSLOCP00000010796	Uncharacterized protein.	OMA1 zinc metallopeptidase.	0.948
W5M0P6_LEPOC	churc1	ENSLOCP00000001953	ENSLOCP00000016660	Uncharacterized protein.	Churchill domain containing 1.	0.901
W5M0P6_LEPOC	cog6	ENSLOCP00000001953	ENSLOCP00000010742	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.770
W5M0P6_LEPOC	fnta	ENSLOCP00000001953	ENSLOCP00000014959	Uncharacterized protein.	Farnesyltransferase, CAAX box, alpha.	0.938
W5M0P6_LEPOC	icmt	ENSLOCP00000001953	ENSLOCP00000005851	Uncharacterized protein.	Protein-S-isoprenylcysteine O-methyltransferase.	0.946
W5M0P6_LEPOC	usp36	ENSLOCP00000001953	ENSLOCP00000015642	Uncharacterized protein.	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family.	0.721
W5M0P6_LEPOC	zmpste24	ENSLOCP00000001953	ENSLOCP00000005215	Uncharacterized protein.	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.983
W5MQY7_LEPOC	LOC102684798	ENSLOCP00000010796	ENSLOCP00000015288	OMA1 zinc metallopeptidase.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.750