Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
W5M0P7_LEPOCArrestin domain containing 1b. (434 aa)    
Predicted Functional Partners:
itch
E3 ubiquitin-protein ligase.
    
 
 0.975
tsg101
Tumor susceptibility 101a.
   
 
 0.962
vps37a
VPS37A subunit of ESCRT-I.
    
 
 0.949
kctd2
Potassium channel tetramerization domain containing 2.
    
   0.926
W5M5I9_LEPOC
E3 ubiquitin-protein ligase.
    
 
 0.876
W5MWB1_LEPOC
E3 ubiquitin-protein ligase.
    
 
 0.876
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.851
nedd4
E3 ubiquitin-protein ligase.
    
 
 0.851
HECW2
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a.
    
 
 0.830
hecw1
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1b.
    
 
 0.830
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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