Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102686567Metalloendopeptidase. (315 aa)    
Predicted Functional Partners:
chrd
Chordin; Belongs to the chordin family.
    
 
 0.570
LOC102698056
Thimet oligopeptidase 1.
      
 0.524
W5MQY7_LEPOC
OMA1 zinc metallopeptidase.
      
 0.524
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
      
 0.506
W5MR54_LEPOC
FGGY carbohydrate kinase domain containing.
      
 0.506
W5NA62_LEPOC
Hyaluronidase.
      
 0.505
LOC102686449
Si:ch211-225p5.8.
      
 0.500
scn1b
Sodium channel, voltage-gated, type I, beta b.
      
 0.500
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.492
apba1
Amyloid beta (A4) precursor protein-binding, family A, member 1a.
      
 0.492
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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