W5M0Q3_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

W5M0Q3_LEPOC

Uncharacterized protein. (73 aa)

Predicted Functional Partners:

mysm1

0.709

ankrd29

0.692

slc35e4

0.692

riok2

0.689

W5M375_LEPOC

0.680

thoc1

0.676

mllt11

0.645

tmem144

0.631

mrpl21

0.628

cdh22

0.616

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5M0Q3_LEPOC	W5M375_LEPOC	ENSLOCP00000001960	ENSLOCP00000002833	Uncharacterized protein.	Transmembrane protein 234.	0.680
W5M0Q3_LEPOC	ankrd29	ENSLOCP00000001960	ENSLOCP00000001734	Uncharacterized protein.	Ankyrin repeat domain 29.	0.692
W5M0Q3_LEPOC	cdh22	ENSLOCP00000001960	ENSLOCP00000003079	Uncharacterized protein.	Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.	0.616
W5M0Q3_LEPOC	mllt11	ENSLOCP00000001960	ENSLOCP00000021785	Uncharacterized protein.	MLLT11 transcription factor 7 cofactor.	0.645
W5M0Q3_LEPOC	mrpl21	ENSLOCP00000001960	ENSLOCP00000001712	Uncharacterized protein.	Mitochondrial ribosomal protein L21.	0.628
W5M0Q3_LEPOC	mysm1	ENSLOCP00000001960	ENSLOCP00000010813	Uncharacterized protein.	Myb-like, SWIRM and MPN domains 1.	0.709
W5M0Q3_LEPOC	riok2	ENSLOCP00000001960	ENSLOCP00000007770	Uncharacterized protein.	RIO kinase 2 (yeast).	0.689
W5M0Q3_LEPOC	slc35e4	ENSLOCP00000001960	ENSLOCP00000009721	Uncharacterized protein.	Solute carrier family 35 member E4.	0.692
W5M0Q3_LEPOC	thoc1	ENSLOCP00000001960	ENSLOCP00000002472	Uncharacterized protein.	THO complex 1.	0.676
W5M0Q3_LEPOC	tmem144	ENSLOCP00000001960	ENSLOCP00000009874	Uncharacterized protein.	Transmembrane protein 144a.	0.631
W5M375_LEPOC	W5M0Q3_LEPOC	ENSLOCP00000002833	ENSLOCP00000001960	Transmembrane protein 234.	Uncharacterized protein.	0.680
W5M375_LEPOC	slc35e4	ENSLOCP00000002833	ENSLOCP00000009721	Transmembrane protein 234.	Solute carrier family 35 member E4.	0.681
W5M375_LEPOC	tmem144	ENSLOCP00000002833	ENSLOCP00000009874	Transmembrane protein 234.	Transmembrane protein 144a.	0.567
ankrd29	W5M0Q3_LEPOC	ENSLOCP00000001734	ENSLOCP00000001960	Ankyrin repeat domain 29.	Uncharacterized protein.	0.692
ankrd29	cdh22	ENSLOCP00000001734	ENSLOCP00000003079	Ankyrin repeat domain 29.	Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.	0.665
ankrd29	mysm1	ENSLOCP00000001734	ENSLOCP00000010813	Ankyrin repeat domain 29.	Myb-like, SWIRM and MPN domains 1.	0.416
ankrd29	thoc1	ENSLOCP00000001734	ENSLOCP00000002472	Ankyrin repeat domain 29.	THO complex 1.	0.624
cdh22	W5M0Q3_LEPOC	ENSLOCP00000003079	ENSLOCP00000001960	Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.616
cdh22	ankrd29	ENSLOCP00000003079	ENSLOCP00000001734	Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.	Ankyrin repeat domain 29.	0.665
mllt11	W5M0Q3_LEPOC	ENSLOCP00000021785	ENSLOCP00000001960	MLLT11 transcription factor 7 cofactor.	Uncharacterized protein.	0.645