STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EBF4EBF family member 4. (623 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.731
yod1
YOD1 deubiquitinase.
    
   0.719
plaa
Phospholipase A2-activating protein.
    
   0.719
SCD5
Stearoyl-CoA desaturase 5; Belongs to the fatty acid desaturase type 1 family.
    
 
 0.520
CYB5R4
Cytochrome b5 reductase 4.
    
 0.485
lhx2
LIM homeobox 2b.
   
 
 0.475
lhx9
LIM homeobox 9.
   
 
 0.475
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.453
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.453
SPATA5
Spermatogenesis associated 5.
    
 0.449
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.