Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgcgSarcoglycan, gamma. (344 aa)    
Predicted Functional Partners:
sgca
Sarcoglycan, alpha.
   
 0.995
W5MYB8_LEPOC
Sarcoglycan, epsilon.
   
 0.994
sgcd
Sarcoglycan, delta (dystrophin-associated glycoprotein).
  
0.993
SGCZ
Sarcoglycan zeta.
  
0.993
W5N9S0_LEPOC
Sarcoglycan, beta (dystrophin-associated glycoprotein).
    
 0.993
sspn
Sarcospan (Kras oncogene-associated gene).
   
 0.989
dag1
Dystroglycan 1.
    
 0.984
W5NDW5_LEPOC
Peptidase S72 domain-containing protein.
    
 0.984
W5NHN3_LEPOC
Dystrobrevin.
  
 0.870
DMD
Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.
    
 0.866
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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