Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
atg3Autophagy-related protein 3. (315 aa)    
Predicted Functional Partners:
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.999
atg7
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]
    
 0.999
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.999
gabarap
GABA(A) receptor-associated protein a.
  
 0.998
LOC102691899
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.998
atg16l2
WD_REPEATS_REGION domain-containing protein.
   
 0.997
GABARAPL2
GABA(A) receptor-associated protein like 2.
   
 0.997
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
   
 0.997
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
   
 0.996
map1lc3a
Microtubule associated protein 1 light chain 3 alpha.
   
 0.996
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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