STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc35a5Solute carrier family 35 member A5. (465 aa)    
Predicted Functional Partners:
slc35c2
Solute carrier family 35 member C2.
   
  
 0.707
SLC35D3
Solute carrier family 35 member D3.
   
  
 0.684
slc35d1
Solute carrier family 35 member D1a.
   
  
 0.681
LOC102683822
Solute carrier family 35 member B1.
   
  
 0.681
itm2c
Integral membrane protein 2Ca.
      
 0.678
slc35b4
Solute carrier family 35 member B4.
      
 0.678
slc35b3
Solute carrier family 35 member B3.
      
 0.677
slc33a1
Solute carrier family 33 member 1.
  
  
 0.628
slc35c1
Solute carrier family 35 member C1.
   
  
 0.608
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
      
 0.600
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.