W5M0W6_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5M0W6_LEPOC

Uncharacterized protein. (543 aa)

Predicted Functional Partners:

drg2

0.628

cs

0.608

pole2

0.608

clg3h15orf40

0.608

clg7hxorf56

0.608

RANBP2

0.578

LOC102685770

0.547

W5MIC7_LEPOC

0.547

csnk2a1

0.540

csnk2a2

0.540

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102685770	RANBP2	ENSLOCP00000002736	ENSLOCP00000012667	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	RAN binding protein 2.	0.648
LOC102685770	W5M0W6_LEPOC	ENSLOCP00000002736	ENSLOCP00000002023	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.547
LOC102685770	clg3h15orf40	ENSLOCP00000002736	ENSLOCP00000015933	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Zgc:193812.	0.786
LOC102685770	clg7hxorf56	ENSLOCP00000002736	ENSLOCP00000018102	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Zgc:103697.	0.786
LOC102685770	cs	ENSLOCP00000002736	ENSLOCP00000005579	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Citrate synthase; Belongs to the citrate synthase family.	0.900
LOC102685770	csnk2a1	ENSLOCP00000002736	ENSLOCP00000002562	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.633
LOC102685770	csnk2a2	ENSLOCP00000002736	ENSLOCP00000004431	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Casein kinase 2, alpha prime polypeptide b; Belongs to the protein kinase superfamily.	0.633
LOC102685770	drg2	ENSLOCP00000002736	ENSLOCP00000007347	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Developmentally regulated GTP binding protein 2.	0.786
LOC102685770	pole2	ENSLOCP00000002736	ENSLOCP00000014050	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.798
RANBP2	LOC102685770	ENSLOCP00000012667	ENSLOCP00000002736	RAN binding protein 2.	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.648
RANBP2	W5M0W6_LEPOC	ENSLOCP00000012667	ENSLOCP00000002023	RAN binding protein 2.	Uncharacterized protein.	0.578
RANBP2	W5MIC7_LEPOC	ENSLOCP00000012667	ENSLOCP00000008136	RAN binding protein 2.	Solute carrier family 25 member 1a; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.648
RANBP2	clg3h15orf40	ENSLOCP00000012667	ENSLOCP00000015933	RAN binding protein 2.	Zgc:193812.	0.650
RANBP2	clg7hxorf56	ENSLOCP00000012667	ENSLOCP00000018102	RAN binding protein 2.	Zgc:103697.	0.774
RANBP2	cs	ENSLOCP00000012667	ENSLOCP00000005579	RAN binding protein 2.	Citrate synthase; Belongs to the citrate synthase family.	0.672
RANBP2	csnk2a1	ENSLOCP00000012667	ENSLOCP00000002562	RAN binding protein 2.	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.605
RANBP2	csnk2a2	ENSLOCP00000012667	ENSLOCP00000004431	RAN binding protein 2.	Casein kinase 2, alpha prime polypeptide b; Belongs to the protein kinase superfamily.	0.605
RANBP2	drg2	ENSLOCP00000012667	ENSLOCP00000007347	RAN binding protein 2.	Developmentally regulated GTP binding protein 2.	0.548
RANBP2	pole2	ENSLOCP00000012667	ENSLOCP00000014050	RAN binding protein 2.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.699
W5M0W6_LEPOC	LOC102685770	ENSLOCP00000002023	ENSLOCP00000002736	Uncharacterized protein.	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.547