STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M0X2_LEPOCalpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (760 aa)    
Predicted Functional Partners:
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
 
0.902
edem2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
 
0.891
edem3
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
  
 
0.840
W5N6B6_LEPOC
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.557
trpc4ap
Transient receptor potential cation channel, subfamily C, member 4 associated protein a.
 
   
  0.548
SEL1L2
SEL1L2 adaptor subunit of ERAD E3 ligase.
   
 
 0.463
W5LWW8_LEPOC
Thioredoxin domain containing 11.
    
 
 0.448
dnajc3
DnaJ (Hsp40) homolog, subfamily C, member 3a.
    
 
 0.426
W5NB92_LEPOC
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...]
    
 
 0.423
LOC102685587
Creatine kinase, muscle b; Belongs to the ATP:guanido phosphotransferase family.
 
   
  0.401
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.