STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fundc1FUN14 domain containing 1. (153 aa)    
Predicted Functional Partners:
gabarap
GABA(A) receptor-associated protein a.
    
 0.921
GABARAPL2
GABA(A) receptor-associated protein like 2.
    
 0.914
LOC102692047
Zgc:92606.
    
 0.905
pgam5
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.
     
 0.900
ulk1
Unc-51 like autophagy activating kinase 1a.
    
 0.894
LOC102697324
Tyrosine-protein kinase.
    
 0.877
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
    
 0.862
map1lc3a
Microtubule associated protein 1 light chain 3 alpha.
    
 0.862
csnk2a2
Casein kinase 2, alpha prime polypeptide b; Belongs to the protein kinase superfamily.
   
 
 0.857
csnk2a1
Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.
   
 
 0.784
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.