STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
edil3EGF-like repeats and discoidin I-like domains 3a. (478 aa)    
Predicted Functional Partners:
W5MUZ9_LEPOC
Protein S.
   
 0.772
lman1
Lectin, mannose-binding, 1.
    
 0.680
W5MWG0_LEPOC
ATPase copper transporting beta.
  
 
 0.674
atp7a
ATPase copper transporting alpha.
  
 
 0.674
cp
Ceruloplasmin; Belongs to the multicopper oxidase family.
 
 
    0.666
W5M7C8_LEPOC
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
 
 0.666
mcfd2
Multiple coagulation factor deficiency 2.
     
 0.659
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 
 0.649
hmox2
Heme oxygenase 2b.
    
 0.647
slc40a1
Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
    
 0.644
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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