STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102686674Transmembrane protein 54a. (239 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
    
  0.890
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.863
RANBP2
RAN binding protein 2.
    
 0.736
RIMS2
Regulating synaptic membrane exocytosis 2.
    
  0.711
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.576
W5N7D6_LEPOC
Uncharacterized protein.
    
 0.576
rbbp5
Retinoblastoma binding protein 5.
    
 0.572
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.570
W5NCX0_LEPOC
Tetratricopeptide repeat domain 41.
    
 0.554
W5NH37_LEPOC
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.549
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.