STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M292_LEPOCUBX domain protein 10. (204 aa)    
Predicted Functional Partners:
ubxn6
UBX domain protein 6.
    
 
 0.974
W5NIR9_LEPOC
UBX domain protein 2A.
    
 
 0.974
ASPSCR1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.962
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.951
ift74
Intraflagellar transport 74.
    
 
 0.948
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.946
W5MY78_LEPOC
Intraflagellar transport 88 homolog.
    
   0.946
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.924
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.924
W5LZP3_LEPOC
Uncharacterized protein.
    
   0.916
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.