STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M2I0_LEPOCZgc:110591. (220 aa)    
Predicted Functional Partners:
vars1
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.884
yars1
Tyrosine--tRNA ligase.
  
  
 0.852
W5NJE8_LEPOC
HGTP_anticodon domain-containing protein.
  
 
 0.826
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.751
W5MEE1_LEPOC
PALB2_WD40 domain-containing protein.
   
 
 0.751
W5MEG4_LEPOC
Uncharacterized protein.
   
 
 0.751
nmb
Neuromedin Ba.
     
 0.747
kti12
KTI12 chromatin associated homolog.
     
 0.747
farsa
Phenylalanyl-tRNA synthetase subunit alpha.
  
 
 0.729
fars2
Phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 
 0.719
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.