STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnrnpkHeterogeneous nuclear ribonucleoprotein K, like. (463 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.987
hnrnpc
Heterogeneous nuclear ribonucleoprotein C.
   
 0.981
hnrnpa1
Uncharacterized protein.
   
 0.971
W5MJA0_LEPOC
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.971
W5NDC8_LEPOC
RNA binding motif protein X-linked.
   
 0.962
desi1
Desumoylating isopeptidase 1b.
    
   0.946
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ua.
   
 0.938
W5N2Q4_LEPOC
Uncharacterized protein.
   
 0.937
srsf3
Serine and arginine rich splicing factor 3a.
   
 0.936
srsf1
Serine and arginine rich splicing factor 1b.
   
 0.935
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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