STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M303_LEPOCGRAM domain containing 1Bb. (723 aa)    
Predicted Functional Partners:
W5MIK6_LEPOC
Sodium channel, voltage-gated, type II, beta.
    
 0.642
mpzl2
Ig-like domain-containing protein.
    
 0.642
W5M5I8_LEPOC
GRAM domain containing 1c.
  
 
  
0.602
scn4b
Sodium channel, voltage-gated, type IV, beta a.
    
 0.597
GRAMD2B
GRAM domain containing 2B.
    
  
0.582
trappc10
Trafficking protein particle complex 10.
    
 
 0.469
garnl3
GTPase activating Rap/RanGAP domain like 3.
      
 0.424
carnmt1
Carnosine N-methyltransferase 1.
      
 0.424
tbrg1
Transforming growth factor beta regulator 1.
      
 0.422
W5MC68_LEPOC
GRAM domain containing 1A.
  
 
  
0.418
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.